Basic Information
Locus ID:
nbisL1-mrna-6472
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10556329 | 10560024 | - | nbisL1-mrna-6472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 57,499.86 Da | 63.36 | 68.24 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 134 | 186 | 2.17674E-30 | - |
| Pfam | PF12315 | Protein DA1 | 283 | 501 | 1.8E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 134 | 189 | 2.9E-10 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 160 | 217 | 3.61E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 159 | 1.7E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 127 | 191 | 1.7E-14 | - |
| SMART | SM00132 | lim_4 | 133 | 185 | 1.2E-12 | IPR001781 |
| SMART | SM00726 | uim | 94 | 113 | 0.096 | IPR003903 |
| SMART | SM00726 | uim | 40 | 59 | 16.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 94 | 113 | 9.753311 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 132 | 192 | 11.988999 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 134 | 168 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 91 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_012079106.1 | protein DA1-related 1 [Jatropha curcas] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JXU8 | Uncharacterized protein MANES_12G102600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology