Basic Information
Locus ID:
nbisL1-mrna-6467
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13577917 | 13594992 | + | nbisL1-mrna-6467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 110,427.65 Da | 44.93 | 90.44 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 314 | 366 | 4.30985E-14 | IPR002083 |
| Pfam | PF00917 | MATH domain | 319 | 365 | 0.0034 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 563 | 610 | 9.0E-7 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 456 | 491 | 2.8E-6 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 452 | 497 | 6.67E-10 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 310 | 386 | 5.07E-17 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 156 | 218 | 7.65E-6 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 561 | 632 | 1.2E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 394 | 505 | 1.9E-9 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 298 | 367 | 1.0E-14 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 312 | 365 | 16.274252 | IPR002083 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_012443165.1 | ubiquitin C-terminal hydrolase 13 isoform X1 [Gossypium raimondii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D2RWH0 | ubiquitinyl hydrolase 1 OS=Gossypium raimondii OX=29730 GN=B456_009G081400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology