Basic Information
Locus ID:
nbisL1-mrna-6450
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 9744816 | 9748827 | + | nbisL1-mrna-6450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 63,791.76 Da | 44.29 | 73.49 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 486 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 6.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 447 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 289 | 578 | 9.61E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 282 | 339 | 2.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 348 | 584 | 3.0E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 491 | 534 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 323 | 0.044 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 254 | 279 | 2.3 | IPR000571 |
| SMART | SM00320 | WD40_4 | 363 | 402 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 487 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 447 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 574 | 10.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 19 | 44 | 0.0021 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 19 | 45 | 11.741634 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 254 | 280 | 9.046963 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 323 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 456 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 457 | 486 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 486 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 449 | 10.785595 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 434 | 448 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 434 | 448 | 6.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 310 | 324 | 6.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 474 | 488 | 6.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021687428.1 | zinc finger CCCH domain-containing protein 48-like isoform X4 [Hevea brasiliensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LRG6 | Zinc finger CCCH domain-containing protein 63-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology