Basic Information
Locus ID:
nbisL1-mrna-6425
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3871322 | 3873576 | + | nbisL1-mrna-6425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 27,593.99 Da | 36.36 | 80.89 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 200 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 120 | 159 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 78 | 115 | 5.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 42 | 200 | 4.89E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 18 | 206 | 2.0E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 119 | 159 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 203 | 0.099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 73 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 115 | 5.0E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 83 | 115 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 168 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 126 | 162 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 83 | 115 | 10.408196 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_021886878.1 | coatomer subunit beta'-2 [Carica papaya] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7J8NSZ4 | WD_REPEATS_REGION domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_022339 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology