Basic Information
Locus ID:
nbisL1-mrna-6419
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Protein LST8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 9498847 | 9502615 | + | nbisL1-mrna-6419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 35,598.68 Da | 39.36 | 75.41 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 287 | 5.48281E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 38 | 64 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 71 | 108 | 3.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 245 | 6.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 287 | 2.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 149 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 9 | 306 | 3.77E-64 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 312 | 3.5E-100 | IPR015943 |
| SMART | SM00320 | WD40_4 | 202 | 245 | 9.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 69 | 108 | 1.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 192 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 149 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 64 | 0.83 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 76 | 110 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 76 | 110 | 12.420132 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 117 | 158 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 254 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 117 | 150 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 32 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 292 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 247 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 296 | 13.582925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 10 | 24 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 232 | 246 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 95 | 109 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 136 | 150 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 1.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 1.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 95 | 109 | 1.3E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18140.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_042946188.1 | target of rapamycin complex subunit LST8 isoform X2 [Carya illinoinensis] | 0 |
| Q9AYE4 | Target of rapamycin complex subunit LST8 OS=Oryza sativa subsp. japonica OX=39947 GN=LST8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1PBK8 | Target of rapamycin complex subunit LST8 OS=Carya illinoinensis OX=32201 GN=CIPAW_10G031000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4363 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4676 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021712 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g061170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59279, Sbi_jg63344 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23533 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018415 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02659, Sgl07817 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012534, gene:ENSEOMG00000015051 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0020560, CQ.Regalona.r1.3AG0020570 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01487 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G004900 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703590, gene-LOC103703640 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08176 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G22040.1, AT3G18140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000630m.g.v1.0, Thhalv10021207m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g16250.v2.2, Sp4g01080.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046480.2N, BniB02g017790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1103 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1272 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0123s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g13930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8473 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2449 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006624, Pov_00027926 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14308, Lb6G30918 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1038, AH04.1819, BH01.1177, BH04.1864, CH01.1230 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0580500, gene-QOZ80_7BG0611670 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0334440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063082 |
| Poaceae | Oryza coarctata | 2 | Oco05G020240, Oco06G021030 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g47780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G124700, gene-BS78_05G229500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104681, Pt_Chr0404541, Pt_Chr0404565, Pt_Ctg00232 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G015440, Chr17G004530, Chr31G007410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G051000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG044470, gene_TRIDC4BG004500 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G288600.1, TraesCS4B02G026200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb114830_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19028 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1157, evm.TU.LG21.792 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1197 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6419 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20825, nbisL1-mrna-2351 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4231 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.786 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004879, Maker00017302 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10970, nbisL1-mrna-12445 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13391, nbisL1-mrna-5582 |
| Salicaceae | Populus euphratica | 1 | populus_peu26128 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634336 |
| Solanaceae | Solanum chilense | 1 | SOLCI006086100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015361 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5143 |
| Zosteraceae | Zostera marina | 1 | Zosma01g16280.v3.1 |