Basic Information
Locus ID:
nbisL1-mrna-6407
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3760783 | 3762600 | - | nbisL1-mrna-6407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 16,262.89 Da | 48.11 | 79.52 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 42 | 83 | 1.7E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 31 | 92 | 8.24E-13 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 20 | 95 | 1.7E-16 | IPR036770 |
| SMART | SM00248 | ANK_2a | 55 | 84 | 0.0012 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 55 | 87 | 12.15522 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 55 | 87 | 10.789545 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37500.3 | - | 0 |
| RefSeq | XP_021603433.1 | integrin-linked protein kinase 1 [Manihot esculenta] | 0 |
| Q9M8S6 | Potassium channel SKOR OS=Arabidopsis thaliana OX=3702 GN=SKOR PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2XHK2 | PK_Tyr_Ser-Thr domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_05307 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag4G00547 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2909.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G12649 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029649, Pov_00029657 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.720, evm.TU.Scaffold_3_RagTag.721 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13793 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6407 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.778 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012750 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5245 |
| Salicaceae | Populus euphratica | 1 | populus_peu24920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623793 |
| Solanaceae | Solanum chilense | 1 | SOLCI007409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009611 |