Basic Information
Locus ID:
nbisL1-mrna-6400
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11241714 | 11247779 | + | nbisL1-mrna-6400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 116,872.45 Da | 46.80 | 105.68 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 305 | 369 | 4.7E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 506 | 878 | 2.13E-39 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 371 | 8.83E-17 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 912 | 1037 | 1.3E-6 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 233 | 576 | 6.62E-12 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 49 | 163 | 5.8E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 903 | 1039 | 2.0E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 374 | 3.7E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 527 | 892 | 5.1E-46 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 381 | 524 | 3.4E-11 | IPR011989 |
| SMART | SM00185 | arm_5 | 955 | 995 | 75.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 911 | 951 | 80.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 618 | 660 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 709 | 749 | 73.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 304 | 367 | 1.7E-15 | IPR003613 |
| SMART | SM00185 | arm_5 | 794 | 835 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 837 | 878 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 752 | 793 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 448 | 487 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 577 | 617 | 290.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 300 | 374 | 19.055405 | IPR003613 |
| Coils | Coil | Coil | 167 | 187 | - | - |
| Coils | Coil | Coil | 102 | 129 | - | - |
| Coils | Coil | Coil | 237 | 257 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021647934.1 | U-box domain-containing protein 44-like [Hevea brasiliensis] | 0 |
| Q9SFX2 | U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IWT8 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |