Basic Information
Locus ID:
nbisL1-mrna-6390
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 1787346 | 1790595 | + | nbisL1-mrna-6390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 21,735.25 Da | 45.37 | 90.62 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 123 | 185 | 2.58473E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 121 | 184 | 1.0E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 47 | 108 | 2.0E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 36 | 186 | 4.55E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 11 | 189 | 1.5E-49 | - |
| SMART | SM00054 | efh_1 | 83 | 111 | 0.24 | IPR002048 |
| SMART | SM00054 | efh_1 | 159 | 187 | 1.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 151 | 1.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 155 | 190 | 14.262346 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 15.545536 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 15.043417 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 79 | 114 | 10.189618 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 92 | 104 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 168 | 180 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_006368362.1 | probable calcium-binding protein CML11 [Populus trichocarpa] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | B9MU63 | Calcium-binding protein CML11 OS=Populus trichocarpa OX=3694 GN=POPTR_001G138000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology