Basic Information
Locus ID:
nbisL1-mrna-6385
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3617147 | 3619827 | + | nbisL1-mrna-6385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 41,873.14 Da | 47.92 | 86.20 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00225 | Kinesin motor domain | 71 | 235 | 2.9E-51 | IPR001752 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 285 | 1.17E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 236 | 290 | 2.3E-8 | IPR036961 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 18 | 235 | 4.2E-61 | IPR036961 |
| SMART | SM00129 | kinesin_4 | 19 | 260 | 2.2E-39 | IPR001752 |
| ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 71 | 233 | 44.766392 | IPR001752 |
| ProSitePatterns | PS00411 | Kinesin motor domain signature. | 222 | 233 | - | IPR019821 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 190 | 207 | 7.4E-16 | IPR001752 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 223 | 241 | 7.4E-16 | IPR001752 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 61 | 82 | 7.4E-16 | IPR001752 |
| Coils | Coil | Coil | 259 | 286 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17360.1 | phragmoplast orienting kinesin 1. PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls. | 0 |
| RefSeq | XP_021290851.1 | kinesin-like protein KIN-12C, partial [Herrania umbratica] | 0 |
| Q27IK7 | Kinesin-like protein KIN-12C OS=Arabidopsis thaliana OX=3702 GN=KIN12C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0B0MTR6 | Kinesin-like protein KIF15 OS=Gossypium arboreum OX=29729 GN=F383_24773 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology