Basic Information
Locus ID:
nbisL1-mrna-6384
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 12873161 | 12879750 | + | nbisL1-mrna-6384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 83,707.14 Da | 44.26 | 75.87 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 529 | 764 | 1.5534E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 599 | 6.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 648 | 682 | 0.003 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.2E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 557 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 729 | 765 | 0.0088 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 522 | 764 | 4.35E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 611 | 765 | 7.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 610 | 1.8E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 518 | 557 | 9.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 724 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 641 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 682 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 599 | 9.7E-7 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0094 | IPR006594 |
| SMART | SM00320 | WD40_4 | 726 | 765 | 8.5E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 567 | 599 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 566 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 9.09833 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 733 | 765 | 12.367405 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.055138 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 599 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 733 | 765 | 13.315579 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 544 | 558 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 586 | 600 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 752 | 765 | 1.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 436 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_052489521.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Gossypium raimondii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2NDB2 | LisH domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G234100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology