Basic Information
Locus ID:
nbisL1-mrna-638
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5124332 | 5124697 | + | nbisL1-mrna-638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 13,572.40 Da | 50.57 | 73.22 | -1.01 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31930.1 | 0 | |
| RefSeq | XP_038993280.1 | uncharacterized protein LOC120116990 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A2ZBE1 | VPS54 isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110956pilonHSYRG00259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26722 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21128, Sbi_jg22669 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16552 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018331 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62348, Sgl66885 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021640, CQ.Regalona.r1.2AG0023370 |
| Apiaceae | Apium graveolens | 1 | Ag1G00392 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014130 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120107138 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1023.V1.1, AsparagusV1_05.2334.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G19881 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G31930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017383m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g020920.2N |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g02390, gene.Cymno06g11970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-638 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021104, Pov_00031141 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04610 |
| Salicaceae | Populus euphratica | 2 | populus_peu02194, populus_peu35609 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610255 |
| Solanaceae | Solanum chilense | 1 | SOLCI004604500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022977 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1463 |