Basic Information
Locus ID:
nbisL1-mrna-6378
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3584325 | 3590010 | - | nbisL1-mrna-6378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 115,814.24 Da | 51.87 | 62.06 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 707 | 827 | 2.86782E-51 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 512 | 682 | 2.0E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 742 | 818 | 3.6E-25 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 632 | 831 | 7.99E-51 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 1.71E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 695 | 2.3E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 698 | 859 | 1.4E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 464 | 697 | 4.7E-86 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 3.1E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 507 | 710 | 6.6E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 738 | 818 | 7.8E-33 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.7974 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 488 | 516 | 10.177198 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 519 | 693 | 30.779661 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 697 | 857 | 21.792252 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 639 | 647 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1016 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021608558.1 | DEAD-box ATP-dependent RNA helicase 46 [Manihot esculenta] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W721 | DEAD-box ATP-dependent RNA helicase 46 OS=Manihot esculenta OX=3983 GN=MANES_03G080100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology