Basic Information
Locus ID:
nbisL1-mrna-6375
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3537863 | 3572460 | - | nbisL1-mrna-6375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 319,734.94 Da | 42.32 | 89.17 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2645 | 2754 | 3.16781E-7 | - |
| Pfam | PF00168 | C2 domain | 2644 | 2746 | 5.0E-6 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 1.3E-70 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 803 | 1.4E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2295 | 2394 | 2.3E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2167 | 5.7E-13 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.4E-31 | IPR026854 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2628 | 2745 | 1.47E-8 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 841 | 948 | 3.79E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 839 | 947 | 1.2E-6 | IPR011993 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2629 | 2763 | 6.9E-8 | IPR035892 |
| SMART | SM00239 | C2_3c | 2644 | 2763 | 2.9E-4 | IPR000008 |
| SMART | SM00233 | PH_update | 832 | 943 | 0.0034 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2622 | 2764 | 11.138964 | IPR000008 |
| ProSiteProfiles | PS50003 | PH domain profile. | 831 | 941 | 7.2633 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_048235069.1 | uncharacterized protein LOC8261314 isoform X1 [Ricinus communis] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MAA2 | Uncharacterized protein LOC8261314 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology