Basic Information
Locus ID:
nbisL1-mrna-6369
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 3497560 | 3510315 | + | nbisL1-mrna-6369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 93,661.23 Da | 49.99 | 92.42 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 526 | 813 | 2.98532E-107 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 583 | 761 | 2.2E-39 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 520 | 814 | 3.79E-77 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 651 | 730 | 9.1E-76 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 528 | 760 | 9.1E-76 | - |
| SMART | SM00119 | hect_3 | 545 | 817 | 1.2E-52 | IPR000569 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 45 | 72 | 6.540401 | IPR000048 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 547 | 813 | 46.383881 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17205.1 | ubiquitin protein ligase 6. | 0 |
| RefSeq | XP_021686208.1 | E3 ubiquitin-protein ligase UPL6-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8RWB8 | E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KLU6 | HECT-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28134 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11187, gene_2729 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019978 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38182, Sbi_jg6307 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01593, Sgl06761 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011886, gene:ENSEOMG00000029493 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012830, CQ.Regalona.r1.3BG0012900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232670 |
| Apiaceae | Apium graveolens | 2 | Ag8G02194, Ag9G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000690 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715777, gene-LOC120103986 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3210.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G00075, Ftri2G18609 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17205.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g15400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g047530.2N, BniB07g052790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1391 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0371s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1146 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026306 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G20938, Lb3G20939, Lb3G20940, Lb3G20941 |
| Poaceae | Echinochloa crus-galli | 2 | BH05.1113, CH05.1260 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403890, gene-QOZ80_5BG0452280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0024690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009914 |
| Poaceae | Oryza coarctata | 2 | Oco09G002840, Oco10G002910 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G059800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501815, Pt_Chr0501877 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011920, Chr18G000490, Chr22G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G198200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015460, gene_TRIDC1BG018750 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G106100.3, TraesCS1B02G123400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb282520_P003, Zm00001eb412620_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23477 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26474 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1617, evm.TU.LG11.972 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g13290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.686 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1285 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18462 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6369 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.804 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012572 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5268 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13119 |
| Salicaceae | Populus euphratica | 2 | populus_peu06853, populus_peu20763 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626692 |
| Solanaceae | Solanum chilense | 1 | SOLCI002837100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007824 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8539 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18230.v3.1 |