Basic Information
Locus ID:
nbisL1-mrna-6328
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 5274718 | 5284082 | - | nbisL1-mrna-6328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 102,278.82 Da | 45.11 | 87.31 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 581 | 714 | 2.89178E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 583 | 713 | 4.0E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 736 | 777 | 3.5E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 543 | 779 | 2.29E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 542 | 714 | 7.0E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 715 | 791 | 7.0E-94 | - |
| SMART | SM00382 | AAA_5 | 579 | 716 | 1.5E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 686 | 705 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 241 | - | - |
| Coils | Coil | Coil | 765 | 786 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6MNZ1 | AAA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_040026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology