Basic Information
Locus ID:
nbisL1-mrna-6322
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 8678235 | 8679281 | + | nbisL1-mrna-6322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 38,865.38 Da | 50.16 | 69.71 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 121 | 163 | 2.9E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 166 | 211 | 1.7E-10 | IPR006652 |
| Pfam | PF12937 | F-box-like | 14 | 57 | 1.7E-5 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 90 | 279 | 3.53E-37 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 58 | 8.9E-9 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 61 | 298 | 4.7E-37 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 56 | 1.6E-5 | - |
| SMART | SM00612 | kelc_smart | 177 | 224 | 3.4E-6 | IPR006652 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 2.4E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 128 | 176 | 1.1E-4 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 58 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011047101.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology