Basic Information
Locus ID:
nbisL1-mrna-6285
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 8378825 | 8383850 | + | nbisL1-mrna-6285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 53,443.57 Da | 55.17 | 53.35 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 268 | 351 | 2.1E-23 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 283 | 313 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_021657084.1 | protein WVD2-like 4 isoform X6 [Hevea brasiliensis] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LLJ2 | Uncharacterized protein LOC105138210 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology