Basic Information
Locus ID:
nbisL1-mrna-6268
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 8269946 | 8271462 | + | nbisL1-mrna-6268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 44,940.08 Da | 39.49 | 107.67 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 52 | 1.85685E-20 | - |
| Pfam | PF04564 | U-box domain | 6 | 78 | 1.2E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 98 | 373 | 1.15E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 82 | 3.25E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 76 | 393 | 1.2E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 75 | 8.4E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 4.2E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 37.286392 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_002524055.1 | E3 ubiquitin-protein ligase PUB24 [Ricinus communis] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | B9SDI6 | RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0418900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology