Basic Information
Locus ID:
nbisL1-mrna-6260
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 4916310 | 4920137 | + | nbisL1-mrna-6260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 128,252.61 Da | 30.57 | 110.22 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 502 | 561 | 3.3E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 264 | 286 | 0.77 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1000 | 1093 | 1.0E-17 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 7 | 43 | 2.2E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 705 | 764 | 7.8E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 193 | 214 | 0.81 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 634 | 888 | 5.78E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 977 | 1101 | 1.97E-29 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 336 | 595 | 1.16E-48 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 338 | 1.16E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 336 | 1.9E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 337 | 403 | 3.8E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 598 | 897 | 2.4E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 404 | 479 | 3.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 8 | 115 | 3.2E-28 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1101 | 1178 | 1.5E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 959 | 1071 | 1.0E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 480 | 597 | 6.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 116 | 187 | 3.7E-18 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 703 | 726 | 73.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 727 | 751 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 548 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 213 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 655 | 679 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 680 | 702 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 69 | 94 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 310 | 334 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 117 | 141 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 801 | 825 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 572 | 609 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 381 | 405 | 360.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 69 | 92 | 400.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 310 | 333 | 430.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 165 | 192 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 524 | 545 | 340.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 548 | 574 | 450.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 262 | 283 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 429 | 452 | 380.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 727 | 750 | 35.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 655 | 687 | 60.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 93 | 108 | 170.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 574 | 596 | 7.373124 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 996 | 1178 | 14.393373 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1002 | 1025 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 262 | 275 | 6.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 193 | 206 | 6.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_002510817.1 | leucine-rich repeat receptor protein kinase EMS1 [Ricinus communis] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9R9E2 | Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis OX=3988 GN=RCOM_1496650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |