Basic Information
Locus ID:
nbisL1-mrna-6257
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 4903708 | 4909320 | + | nbisL1-mrna-6257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 66,866.60 Da | 43.82 | 87.02 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 204 | 3.7E-12 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 15 | 75 | 1.5E-6 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 217 | 1.31E-34 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 373 | 1.32E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 110 | 233 | 2.0E-14 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 109 | 2.2E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 375 | 8.5E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.47 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 3.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 18.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.89985 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.124308 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.073198 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 367 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.2386 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 332 | 341 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 479 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LD08 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology