Basic Information
Locus ID:
nbisL1-mrna-6234
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 4777513 | 4780478 | - | nbisL1-mrna-6234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 46,774.39 Da | 29.30 | 77.13 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 296 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 139 | 175 | 2.8E-4 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 109 | 129 | 1.9E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 335 | 0.0078 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 424 | 7.6E-48 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 130 | 3.14E-7 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 15 | 58 | 3.1E-5 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 83 | 130 | 3.2E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 223 | 431 | 5.6E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 222 | 3.7E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 259 | 296 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 252 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 383 | 7.2 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 27 | 52 | 0.57 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 107 | 131 | 3.8E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 299 | 336 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 423 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 175 | 5.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 305 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 184 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 105 | 132 | 15.516052 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 299 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 175 | 11.154684 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 9.845036 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 162 | 176 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 323 | 337 | 3.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology