Basic Information
Locus ID:
nbisL1-mrna-6214
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box-like WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12886690 | 12895307 | + | nbisL1-mrna-6214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 63,405.34 Da | 33.31 | 73.69 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 214 | 522 | 8.24959E-78 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 480 | 4.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 346 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 305 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 522 | 6.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 245 | 7.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 429 | 3.1E-9 | IPR001680 |
| Pfam | PF08513 | LisH | 8 | 33 | 1.4E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 209 | 564 | 2.01E-80 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 202 | 566 | 6.2E-143 | IPR015943 |
| Gene3D | G3DSA:1.20.960.30 | - | 2 | 91 | 1.6E-28 | - |
| SMART | SM00320 | WD40_4 | 483 | 522 | 1.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 429 | 4.2E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 480 | 6.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 563 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 387 | 2.6 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 1.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 266 | 305 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 246 | 4.6E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 348 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 307 | 10.021053 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 9.839948 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 531 | 17.793619 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 314 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 397 | 431 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 397 | 438 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 255 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 214 | 247 | 12.420132 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 439 | 489 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 490 | 527 | 13.421944 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 333 | 347 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 467 | 481 | 3.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 233 | 247 | 3.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 3.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 161 | - | - |
| Coils | Coil | Coil | 94 | 138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67320.1 | WD-40 repeat family protein. Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. | 0 |
| RefSeq | XP_050206444.1 | WD40 repeat-containing protein HOS15 isoform X4 [Mercurialis annua] | 0 |
| Q9FN19 | WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana OX=3702 GN=HOS15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MRK4 | F-box-like/WD repeat-containing protein TBL1XR1 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg22739, jg25393 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23966, gene_6088 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027603 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g015290, BVRB_6g127550 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg13095, Sbi_jg39707, Sbi_jg39709, Sbi_jg52757 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14621, Seu_jg9089 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00010163, GOSA_00013151, GOSA_00013152 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl12492, Sgl12493, Sgl17769, Sgl17770, Sgl33867, Sgl33869 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001072, gene:ENSEOMG00000027606 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025620, CQ.Regalona.r1.6BG0027140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205550 |
| Apiaceae | Apium graveolens | 4 | Ag3G00130, Ag4G01126, Ag4G01128, Ag4G01130 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G017260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700829, gene-LOC103723685 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1343.V1.1, AsparagusV1_08.2800.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G16281, Ftri9G32452, FtriNA10403 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003834m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g014530.2N, BniB07g043730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1793, Ceq05G1376 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1933, Cgl05G1380 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01770 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0294s00007.v1.0, Dusal.0640s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10547 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.950 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037030 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G21159, Lb3G21163, Lb8G36071 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.220, BH09.304, CH09.332 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0326450, gene-QOZ80_4BG0358490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0147120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006982 |
| Poaceae | Oryza coarctata | 2 | Oco13G006080, Oco14G006590 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g22220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G046400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G015760, Chr30G015690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G424700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG031220, gene_TRIDC2BG035760 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G227200.3, TraesCS2B02G255700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb088250_P001, Zm00001eb419800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32073 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20920 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.680, evm.TU.LG12.1051 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1229 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17323, nbisL1-mrna-739 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13208 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2488 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.498 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001732 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6214 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1931 |
| Salicaceae | Populus euphratica | 1 | populus_peu23333 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604079, gene-LOC132627811 |
| Solanaceae | Solanum chilense | 4 | SOLCI001606300, SOLCI002711300, SOLCI003508000 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107006567, gene-LOC107006823, gene-LOC107006916 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6656_chr03_-, gene_3210 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1814, TC10G2395 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22250.v3.1 |