Basic Information
Locus ID:
nbisL1-mrna-6211
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 7813287 | 7816908 | - | nbisL1-mrna-6211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 38,054.15 Da | 47.57 | 82.11 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 193 | 0.26 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 327 | 1.98E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 333 | 5.6E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 155 | 193 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 240 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 8.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 152 | 0.49 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 284 | 9.439068 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021289421.1 | WD repeat-containing protein LWD1-like [Herrania umbratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1ARC8 | WD repeat-containing protein LWD1-like OS=Herrania umbratica OX=108875 GN=LOC110420434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology