Basic Information
Locus ID:
nbisL1-mrna-6205
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12987440 | 12990331 | - | nbisL1-mrna-6205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 51,198.43 Da | 55.22 | 84.06 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 187 | 231 | 2.3E-5 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 259 | 326 | 1.5E-13 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 98 | 9.42E-11 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 120 | 3.0E-9 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 265 | 350 | 18.590904 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 16 | 81 | 8.668803 | IPR000210 |
| Coils | Coil | Coil | 376 | 410 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67385.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021680814.1 | BTB/POZ domain-containing protein At5g67385-like isoform X1 [Hevea brasiliensis] | 0 |
| Q66GP0 | BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis thaliana OX=3702 GN=SR1IP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JTY4 | Uncharacterized protein MANES_12G111300 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19646, jg39962 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23988 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027553 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13133, Sbi_jg52713 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010130 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl34617, Sgl40037, Sgl40039, Sgl40040 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003776, gene:ENSEOMG00000025649 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026050, CQ.Regalona.r1.6BG0027490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205270 |
| Apiaceae | Apium graveolens | 2 | Ag5G00320, Ag9G01303 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G002880, COCNU_13G006600 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705276 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1280.V1.1, AsparagusV1_08.1281.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G25870, Ftri18G03270, Ftri6G33099 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G49970.1, AT5G67385.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003858m.g.v1.0, Thhalv10010248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29280.v2.2, Sp5g12120.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g000440.2N, BniB06g014470.2N, BniB08g063960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1402 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1402 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10070, nbisL1-mrna-4725 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1510 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023820, Pov_00030522 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G05409, Lb1G05428, Lb1G05494, Lb1G05504, Lb3G16555 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4585, BH01.2544, Contig181.8 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0238080, gene-QOZ80_3BG0289940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070038 |
| Poaceae | Oryza coarctata | 2 | Oco05G005960, Oco06G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G436900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101609, Pt_Chr0404867 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G027130, Chr12G012250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G433600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG006850, gene_TRIDC4BG044330 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G049300.1, TraesCS4B02G255500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb007280_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2537, nbis-gene-4116 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1827, Zma_g4184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.95, evm.TU.LG25.1239 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1213, evm.TU.Scaffold_6_RagTag.1805 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17346 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2345 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11963 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1102 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007725 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15460, nbisL1-mrna-6205 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1915, nbisL1-mrna-3279 |
| Salicaceae | Populus euphratica | 2 | populus_peu29941, populus_peu38013 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622277, gene-LOC132623087 |
| Solanaceae | Solanum chilense | 3 | SOLCI005356500, SOLCI005529300, SOLCI005650500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009000, gene-LOC107011223 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3815 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1866 |
| Zosteraceae | Zostera marina | 2 | Zosma05g08020.v3.1, Zosma05g22590.v3.1 |