Basic Information
Locus ID:
nbisL1-mrna-6204
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Casein kinase II subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12991620 | 12996066 | + | nbisL1-mrna-6204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 48,477.90 Da | 35.91 | 91.02 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14132 | STKc_CK2_alpha | 104 | 408 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 123 | 408 | 7.6E-64 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 92 | 412 | 1.48E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 123 | 199 | 1.1E-116 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 200 | 408 | 1.1E-116 | - |
| SMART | SM00220 | serkin_6 | 123 | 408 | 6.5E-74 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 123 | 408 | 42.802711 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 129 | 152 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 236 | 248 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67380.1 | casein kinase alpha 1. casein kinase II catalytic subunit alpha | 0 |
| RefSeq | XP_012079370.1 | casein kinase II subunit alpha-2 [Jatropha curcas] | 0 |
| Q9AR27 | Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. indica OX=39946 GN=HD6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L7K3 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology