Basic Information
Locus ID:
nbisL1-mrna-62
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3101508 | 3102064 | - | nbisL1-mrna-62 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 16,497.68 Da | 48.11 | 86.77 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 140 | 7.57E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3 | 150 | 8.1E-11 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 2 | 155 | 8.824576 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 8 | 29 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41910.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024458515.1 | mitogen-activated protein kinase kinase kinase 20 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K2A427 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G181000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-62 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10293 |