Basic Information
Locus ID:
nbisL1-mrna-618
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Lysosomal alpha-mannosidase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6672796 | 6679814 | + | nbisL1-mrna-618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 112,425.98 Da | 35.88 | 80.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 14 | 293 | 2.97574E-175 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 882 | 989 | 1.2E-10 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 334 | 424 | 7.9E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 586 | 800 | 2.8E-46 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 15 | 329 | 3.8E-90 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 3 | 331 | 1.5E-103 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 436 | 992 | 3.61E-139 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 333 | 428 | 4.58E-28 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 14 | 297 | 3.0E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 867 | 993 | 1.1E-32 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 377 | 431 | 4.1E-22 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 579 | 848 | 4.2E-89 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 451 | 573 | 1.7E-31 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 298 | 376 | 6.8E-31 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 334 | 408 | 3.9E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_034908884.1 | probable alpha-mannosidase At5g13980 [Populus alba] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2XL33 | Alpha-mannosidase OS=Populus deltoides OX=3696 GN=H0E87_022127 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology