Basic Information
Locus ID:
nbisL1-mrna-6175
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11174814 | 11177676 | + | nbisL1-mrna-6175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 52,948.07 Da | 53.94 | 78.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 291 | 336 | 3.9E-8 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 26 | 210 | 3.7E-54 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 288 | 349 | 1.44E-15 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 279 | 352 | 1.0E-14 | IPR036638 |
| SMART | SM00353 | finulus | 293 | 342 | 1.8E-13 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 287 | 336 | 15.808585 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 286 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_007051457.2 | PREDICTED: transcription factor bHLH14 [Theobroma cacao] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A061DS37 | Basic helix-loop-helix DNA-binding family protein OS=Theobroma cacao OX=3641 GN=TCM_005064 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology