Basic Information
Locus ID:
nbisL1-mrna-6160
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 13526934 | 13532630 | + | nbisL1-mrna-6160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 76,037.12 Da | 31.95 | 77.28 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 43 | 324 | 1.90871E-83 | - |
| CDD | cd10316 | RGL4_M | 364 | 463 | 5.67079E-32 | IPR029413 |
| CDD | cd10317 | RGL4_C | 475 | 663 | 9.48187E-48 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 388 | 460 | 1.7E-23 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 39 | 233 | 2.6E-89 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 473 | 662 | 6.9E-51 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 470 | 663 | 3.06E-44 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 48 | 324 | 8.16E-12 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 361 | 460 | 3.73E-7 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 43 | 340 | 2.6E-18 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 471 | 663 | 1.1E-17 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 361 | 460 | 2.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology