Basic Information
Locus ID:
nbisL1-mrna-6157
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11051056 | 11054945 | - | nbisL1-mrna-6157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 36,761.54 Da | 46.80 | 72.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 58 | 96 | 1.90746E-14 | - |
| CDD | cd03829 | Sina | 174 | 302 | 2.70911E-66 | - |
| Pfam | PF03145 | Seven in absentia protein family | 102 | 301 | 1.6E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 100 | 5.01E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 113 | 305 | 8.5E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 163 | 2.5E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 112 | 3.9E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 164 | 301 | 7.0E-39 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 96 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 113 | 173 | 14.006327 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_022733825.1 | E3 ubiquitin-protein ligase SINAT3-like [Durio zibethinus] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5Y091 | RING-type E3 ubiquitin transferase OS=Durio zibethinus OX=66656 GN=LOC111287491 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology