Basic Information
Locus ID:
nbisL1-mrna-6155
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11042278 | 11043808 | - | nbisL1-mrna-6155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 31,930.05 Da | 55.63 | 86.38 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 163 | 206 | 8.3E-12 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 5 | 66 | 1.7E-8 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 209 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 211 | 3.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 205 | 2.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 206 | 12.54829 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022757549.1 | putative RING-H2 finger protein ATL21A [Durio zibethinus] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P5ZXT4 | putative RING-H2 finger protein ATL21A OS=Durio zibethinus OX=66656 GN=LOC111304835 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology