Basic Information
Locus ID:
nbisL1-mrna-6116
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 1902503 | 1906661 | + | nbisL1-mrna-6116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 111,715.01 Da | 47.12 | 108.30 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 264 | 328 | 2.8E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 201 | 532 | 1.55E-8 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 870 | 996 | 3.64E-5 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 464 | 836 | 4.74E-37 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 330 | 4.15E-17 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 488 | 1.8E-10 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 122 | 3.5E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 861 | 1002 | 2.7E-6 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 489 | 850 | 2.7E-43 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 333 | 1.3E-17 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 2.5E-16 | IPR003613 |
| SMART | SM00185 | arm_5 | 710 | 751 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 796 | 836 | 34.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 869 | 909 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 576 | 618 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 666 | 707 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 753 | 793 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 535 | 575 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 407 | 446 | 5.4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 587 | 631 | 8.5224 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 721 | 749 | 9.502399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 20.52379 | IPR003613 |
| Coils | Coil | Coil | 61 | 88 | - | - |
| Coils | Coil | Coil | 126 | 146 | - | - |
| Coils | Coil | Coil | 196 | 216 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_024466202.1 | U-box domain-containing protein 44 [Populus trichocarpa] | 0 |
| Q9SFX2 | U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IWT8 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |