Basic Information
Locus ID:
nbisL1-mrna-6100
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 6984982 | 6992729 | + | nbisL1-mrna-6100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 104,712.91 Da | 43.14 | 82.78 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 584 | 624 | 3.58571E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 244 | 299 | 4.0E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 521 | 568 | 2.2E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 585 | 626 | 4.0E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 572 | 626 | 2.26E-16 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 827 | 913 | 1.47E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 667 | 729 | 7.31E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 669 | 731 | 7.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 571 | 660 | 4.4E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 672 | 729 | 0.0025 | IPR001965 |
| SMART | SM00249 | PHD_3 | 584 | 625 | 1.3E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 582 | 627 | 10.379999 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 585 | 624 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 393 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012082509.1 | uncharacterized protein LOC105642316 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology