halophFGD

Basic Information

Locus ID: nbisL1-mrna-6062

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Belongs to the SKP1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	6676888	6678054	+	nbisL1-mrna-6062

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.71	17,776.02 Da	44.95	85.89	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18322	BTB_POZ_SKP1	8	123	4.92739E-59	-
Pfam	PF03931	Skp1 family, tetramerisation domain	7	66	2.7E-27	IPR016073
Pfam	PF01466	Skp1 family, dimerisation domain	109	156	4.0E-29	IPR016072
SUPERFAMILY	SSF54695	POZ domain	7	68	2.54E-20	IPR011333
SUPERFAMILY	SSF81382	Skp1 dimerisation domain-like	81	156	1.03E-31	IPR036296
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	2	158	2.9E-71	IPR011333
SMART	SM00512	skp1_3	6	108	7.5E-52	IPR001232
PIRSF	PIRSF028729	SCF_Skp	1	158	2.2E-66	IPR016897

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

KEGG Pathway

KO Term:

K03094 (S-phase kinase-associated protein 1)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04350 (TGF-beta signaling pathway) map04350 (TGF-beta signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G20140.1	SKP1-like 4.
RefSeq	XP_002510576.1	-
Swiss-Prot	Q9LNT9	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1
TrEMBL	B9R8D3	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg11742, jg30373, jg30375, jg885
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24138, gene_26692
Amaranthaceae	Atriplex hortensis	12	Ah009655, Ah027243, Ah035871, Ah036113, Ah036115, Ah036128 ... Ah036165, Ah036167, Ah036168, Ah036174, Ah036175, Ah036184
Amaranthaceae	Beta vulgaris	4	BVRB_2g035550, BVRB_6g134270, BVRB_7g159220, BVRB_9g213970
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg12240, Sbi_jg12626, Sbi_jg40009, Sbi_jg47208 ... Sbi_jg53314
Amaranthaceae	Salicornia europaea	3	Seu_jg14891, Seu_jg21481, Seu_jg8611
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00002940, GOSA_00007343, GOSA_00010404, GOSA_00014085 ... GOSA_00020450, GOSA_00022086, GOSA_00025725
Amaranthaceae	Suaeda glauca	10	Sgl24045, Sgl29227, Sgl33636, Sgl38947, Sgl55468, Sgl61316 ... Sgl71258, Sgl74830, Sgl78306, Sgl80802
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000017508, gene:ENSEOMG00000018922 ... gene:ENSEOMG00000027288, gene:ENSEOMG00000033248, gene:ENSEOMG00000033813, gene:ENSEOMG00000034031, gene:ENSEOMG00000034771, gene:ENSEOMG00000037626, gene:ENSEOMG00000039195, gene:ENSEOMG00000047499, gene:ENSEOMG00000048461, gene:ENSEOMG00000051796
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.1AG0021470, CQ.Regalona.r1.1AG0021740 ... CQ.Regalona.r1.1BG0002960, CQ.Regalona.r1.1BG0002970, CQ.Regalona.r1.1BG0002980, CQ.Regalona.r1.6AG0021040, CQ.Regalona.r1.6AG0023420, CQ.Regalona.r1.6BG0024800, CQ.Regalona.r1.7BG0002780, CQ.Regalona.r1.7BG0014300, CQ.Regalona.r1.9AG0021840
Anacardiaceae	Pistacia vera	5	pistato.v30110000, pistato.v30110030, pistato.v30111640 ... pistato.v30210650, pistato.v30211290
Apiaceae	Apium graveolens	8	Ag10G00549, Ag10G00929, Ag2G02220, Ag3G02089, Ag5G00843 ... Ag7G01808, Ag7G02137, AgUnG00016
Arecaceae	Cocos nucifera	4	COCNU_08G008840, COCNU_08G008850, COCNU_09G004470 ... COCNU_09G004490
Arecaceae	Phoenix dactylifera	6	gene-LOC103708699, gene-LOC103719236, gene-LOC103719237 ... gene-LOC103719602, gene-LOC103722611, gene-LOC103722617
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2131.V1.1, AsparagusV1_07.2664.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G34082, Ftri13G22716, Ftri18G21011, Ftri4G00616 ... Ftri4G07519, Ftri5G20292
Brassicaceae	Arabidopsis thaliana	8	AT1G20140.1, AT1G75950.1, AT2G25700.1, AT3G60010.1 ... AT3G60020.1, AT4G34210.1, AT4G34470.1, AT5G42190.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10005053m.g.v1.0, Thhalv10006377m.g.v1.0 ... Thhalv10006390m.g.v1.0, Thhalv10008964m.g.v1.0, Thhalv10012168m.g.v1.0, Thhalv10012355m.g.v1.0, Thhalv10019260m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g33740.v2.2, Sp1g35760.v2.2, Sp2g14110.v2.2 ... Sp2g14120.v2.2, Sp4g08260.v2.2, Sp5g03170.v2.2, Sp5g31070.v2.2
Brassicaceae	Brassica nigra	9	BniB04g014250.2N, BniB04g034860.2N, BniB04g061800.2N ... BniB04g061820.2N, BniB05g072480.2N, BniB06g048980.2N, BniB06g053790.2N, BniB06g062860.2N, BniB07g005690.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq02G2638, Ceq02G2642, Ceq03G0845, Ceq06G0127, Ceq07G1806 ... Ceq08G2372, Ceq08G2373, Ceq08G2374, Ceq08G2409
Casuarinaceae	Casuarina glauca	6	Cgl02G2729, Cgl03G0919, Cgl07G1965, Cgl08G2564, Cgl08G2565 ... Cgl08G2619
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g00570, gene.Cymno11g10800
Dunaliellaceae	Dunaliella salina	1	Dusal.0969s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g22310, gene.Thate08g04320
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10451
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.56, evm.TU.LG06.173, evm.TU.LG08.323
Plantaginaceae	Plantago ovata	11	Pov_00001383, Pov_00002574, Pov_00011829, Pov_00012600 ... Pov_00015072, Pov_00015126, Pov_00015161, Pov_00015164, Pov_00015165, Pov_00020640, Pov_00027480
Plumbaginaceae	Limonium bicolor	9	Lb0G37617, Lb3G17639, Lb3G17640, Lb3G17645, Lb3G17646 ... Lb3G17647, Lb3G17649, Lb3G17653, Lb3G18523
Poaceae	Echinochloa crus-galli	16	AH03.2764, AH04.1209, AH05.2313, AH07.189, AH07.2288 ... BH03.2909, BH04.1167, BH06.2370, BH07.14, BH07.3935, CH03.3110, CH03.4827, CH04.1363, CH05.2511, CH06.2587, CH07.2177
Poaceae	Eleusine coracana subsp. coracana	17	gene-QOZ80_2AG0098490, gene-QOZ80_2AG0105900 ... gene-QOZ80_2BG0151960, gene-QOZ80_2BG0159330, gene-QOZ80_2BG0190290, gene-QOZ80_5BG0429970, gene-QOZ80_6AG0512790, gene-QOZ80_6AG0527950, gene-QOZ80_6AG0541820, gene-QOZ80_6BG0464680, gene-QOZ80_6BG0464690, gene-QOZ80_6BG0481940, gene-QOZ80_6BG0495020, gene-QOZ80_7AG0578000, gene-QOZ80_7BG0609310, gene-QOZ80_9AG0681320, gene-QOZ80_9BG0706620
Poaceae	Hordeum vulgare	37	HORVU.MOREX.r3.2HG0206080.1.CDS1 ... HORVU.MOREX.r3.2HG0206090.1.CDS1, HORVU.MOREX.r3.2HG0206100.1.CDS1, HORVU.MOREX.r3.2HG0206110.1.CDS1, HORVU.MOREX.r3.2HG0206120.1.CDS1, HORVU.MOREX.r3.2HG0206130.1.CDS1, HORVU.MOREX.r3.2HG0206160.1.CDS1, HORVU.MOREX.r3.2HG0206170.1.CDS1, HORVU.MOREX.r3.2HG0206200.1.CDS1, HORVU.MOREX.r3.2HG0206230.1.CDS1, HORVU.MOREX.r3.2HG0206260.1.CDS1, HORVU.MOREX.r3.2HG0206300.1.CDS1, HORVU.MOREX.r3.2HG0206340.1.CDS1, HORVU.MOREX.r3.3HG0231260.1.CDS1, HORVU.MOREX.r3.4HG0408540.1, HORVU.MOREX.r3.5HG0500660.1, HORVU.MOREX.r3.5HG0506420.1.CDS1, HORVU.MOREX.r3.5HG0507510.1.CDS1, HORVU.MOREX.r3.5HG0523700.1.CDS1, HORVU.MOREX.r3.5HG0523710.1.CDS1, HORVU.MOREX.r3.5HG0523750.1.CDS1, HORVU.MOREX.r3.5HG0523760.1.CDS1, HORVU.MOREX.r3.5HG0523770.1.CDS1, HORVU.MOREX.r3.5HG0523790.1.CDS1, HORVU.MOREX.r3.5HG0523800.1.CDS1, HORVU.MOREX.r3.5HG0523810.1.CDS1, HORVU.MOREX.r3.5HG0523820.1.CDS1, HORVU.MOREX.r3.5HG0523840.1.CDS1, HORVU.MOREX.r3.6HG0538250.1, HORVU.MOREX.r3.6HG0585460.1.CDS1, HORVU.MOREX.r3.7HG0636660.1, HORVU.MOREX.r3.7HG0733030.1.CDS1, HORVU.MOREX.r3.7HG0740860.1.CDS1, HORVU.MOREX.r3.7HG0740890.1.CDS1, HORVU.MOREX.r3.7HG0740910.1.CDS1, HORVU.MOREX.r3.7HG0740940.1.CDS1, HORVU.MOREX.r3.7HG0740970.1.CDS1
Poaceae	Lolium multiflorum	20	gene-QYE76_004132, gene-QYE76_004296, gene-QYE76_007240 ... gene-QYE76_007417, gene-QYE76_013547, gene-QYE76_019113, gene-QYE76_021740, gene-QYE76_036864, gene-QYE76_036866, gene-QYE76_036871, gene-QYE76_036872, gene-QYE76_040328, gene-QYE76_044714, gene-QYE76_044715, gene-QYE76_058991, gene-QYE76_058995, gene-QYE76_061864, gene-QYE76_062724, gene-QYE76_062732, gene-QYE76_062734
Poaceae	Oryza coarctata	9	Oco03G000060, Oco13G013140, Oco14G013890, Oco17G001450 ... Oco17G003850, Oco17G010660, Oco18G001430, Oco21G005300, Oco22G006280
Poaceae	Oryza sativa	11	LOC_Os02g01160.1, LOC_Os02g13180.1, LOC_Os07g05150.1 ... LOC_Os07g05160.1, LOC_Os07g05180.1, LOC_Os07g43250.1, LOC_Os07g43270.1, LOC_Os09g10230.1, LOC_Os09g10270.1, LOC_Os09g36830.1, LOC_Os11g26910.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G258000, gene-BS78_04G001900 ... gene-BS78_04G002000, gene-BS78_04G171000, gene-BS78_05G135100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0103008, Pt_Chr0200472, Pt_Chr0301975, Pt_Chr0304317 ... Pt_Chr0304366, Pt_Chr0601046, Pt_Chr0701060, Pt_Chr0701085, Pt_Chr0702827
Poaceae	Sporobolus alterniflorus	13	Chr07G002270, Chr07G015780, Chr10G014360, Chr11G007930 ... Chr14G009980, Chr14G009990, Chr14G010020, Chr14G010030, Chr16G007470, Chr17G006780, Chr21G010120, Chr31G004320, Chr31G007110
Poaceae	Thinopyrum elongatum	30	Tel2E01G889100, Tel2E01G956700, Tel2E01G957600 ... Tel2E01G957700, Tel2E01G957800, Tel2E01G957900, Tel3E01G141400, Tel3E01G827200, Tel5E01G182600, Tel5E01G259100, Tel5E01G286700, Tel5E01G298900, Tel5E01G526000, Tel5E01G526100, Tel5E01G526200, Tel5E01G590700, Tel5E01G731800, Tel5E01G731900, Tel5E01G732200, Tel5E01G732400, Tel5E01G780800, Tel6E01G001000, Tel6E01G099700, Tel6E01G099800, Tel6E01G250700, Tel7E01G045800, Tel7E01G066300, Tel7E01G355400, Tel7E01G852500, Tel7E01G853200
Poaceae	Triticum dicoccoides	24	gene_TRIDC2AG060920, gene_TRIDC2AG073250 ... gene_TRIDC2AG078770, gene_TRIDC2BG064490, gene_TRIDC2BG079680, gene_TRIDC3AG071450, gene_TRIDC3BG013030, gene_TRIDC3BG046070, gene_TRIDC3BG060340, gene_TRIDC3BG081740, gene_TRIDC4AG054680, gene_TRIDC4AG069680, gene_TRIDC4BG056600, gene_TRIDC5AG048910, gene_TRIDC5AG066380, gene_TRIDC5AG072170, gene_TRIDC5BG029170, gene_TRIDC5BG052830, gene_TRIDC5BG058130, gene_TRIDC6AG004710, gene_TRIDC6BG001890, gene_TRIDC6BG006590, gene_TRIDC7AG001890, gene_TRIDC7BG014680
Poaceae	Triticum aestivum	43	TraesCS2A02G522300.1.cds1, TraesCS2B02G442100.1.cds1 ... TraesCS2B02G590600.1.cds1, TraesCS2D02G420100.1.cds1, TraesCS2D02G560300.1.cds1, TraesCS2D02G560400.1.cds1, TraesCS2D02G560500.1.cds1, TraesCS2D02G560700.1.cds1, TraesCS3B02G092200.1.cds1, TraesCS3B02G308600.1, TraesCS3B02G566400.1.cds1, TraesCS3D02G077800.1.cds1, TraesCS3D02G509600.1.cds1, TraesCS4A02G366400.1.cds1, TraesCS4A02G472600.1, TraesCS4B02G337400.1, TraesCS5A02G168900.1.cds1, TraesCS5A02G331300.1, TraesCS5A02G370400.1.cds1, TraesCS5A02G462800.1.cds1, TraesCS5B02G165700.1.cds1, TraesCS5B02G331700.1, TraesCS5B02G372700.1.cds1, TraesCS5B02G474100.1.cds1, TraesCS5D02G173200.1.cds1, TraesCS5D02G337000.1, TraesCS5D02G337100.1, TraesCS5D02G379900.1.cds1, TraesCS5D02G475400.1.cds1, TraesCS5D02G475600.1.cds1, TraesCS6A02G000300.1, TraesCS6B02G004300.1, TraesCS6B02G053400.1, TraesCS6D02G001600.1, TraesCS6D02G002600.1, TraesCS6D02G044400.1, TraesCS6D02G045500.1.cds1, TraesCS7A02G020600.1, TraesCS7A02G498800.1.cds1, TraesCS7B02G098900.1.cds1, TraesCS7D02G016900.1, TraesCS7D02G194900.1.cds1, TraesCS7D02G439100.1.cds1
Poaceae	Zea mays	4	Zm00001eb160440_P001, Zm00001eb160450_P002 ... Zm00001eb169970_P001, Zm00001eb229260_P001
Poaceae	Zoysia japonica	4	nbis-gene-320, nbis-gene-36025, nbis-gene-38649 ... nbis-gene-49534
Poaceae	Zoysia macrostachya	5	Zma_g17870, Zma_g18781, Zma_g29988, Zma_g32172, Zma_g6894
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.1816, evm.TU.LG03.1505, evm.TU.LG05.318 ... evm.TU.LG09.123, evm.TU.LG12.173, evm.TU.LG25.545, evm.TU.LG25.994
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g40480, gene.Posoc06g09250
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.651, evm.TU.Scaffold_1_RagTag.2325 ... evm.TU.Scaffold_3_RagTag.74, evm.TU.Scaffold_6_RagTag.2135, evm.TU.Scaffold_8_RagTag.1312
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-16993, nbisL1-mrna-16995, nbisL1-mrna-211 ... nbisL1-mrna-212, nbisL1-mrna-5124, nbisL1-mrna-5125, nbisL1-mrna-5126, nbisL1-mrna-6062, nbisL1-mrna-77, nbisL1-mrna-9255
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14336, nbisL1-mrna-4995
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15334, nbisL1-mrna-15337, nbisL1-mrna-3238 ... nbisL1-mrna-5874
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000011l.1309, evm.TU.utg000016l.57 ... evm.TU.utg000018l.442, evm.TU.utg000019l.1171
Rhizophoraceae	Kandelia obovata	3	Maker00003379, Maker00006818, Maker00017072
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15681, nbisL1-mrna-3307, nbisL1-mrna-4615 ... nbisL1-mrna-6579, nbisL1-mrna-991
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11161, nbisL1-mrna-22465, nbisL1-mrna-2448 ... nbisL1-mrna-8327
Salicaceae	Populus euphratica	7	populus_peu03283, populus_peu08692, populus_peu14098 ... populus_peu15389, populus_peu30135, populus_peu33034, populus_peu36658
Solanaceae	Lycium barbarum	6	gene-LOC132599336, gene-LOC132599337, gene-LOC132604515 ... gene-LOC132606646, gene-LOC132606648, gene-LOC132611496
Solanaceae	Solanum chilense	4	SOLCI005866400, SOLCI006584300, SOLCI006701800 ... SOLCI007440500
Solanaceae	Solanum pennellii	6	gene-LOC107001688, gene-LOC107004142, gene-LOC107004796 ... gene-LOC107008272, gene-LOC107032074, gene-LOC114073833
Tamaricaceae	Reaumuria soongarica	4	STRG.11779_chr02_-, STRG.1753_chr01_+, STRG.9008_chr03_+ ... gene_12321
Tamaricaceae	Tamarix chinensis	3	TC10G0143, TC11G0756, TC12G0774
Zosteraceae	Zostera marina	1	Zosma05g31050.v3.1