Basic Information
Locus ID:
nbisL1-mrna-6052
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10132375 | 10137896 | + | nbisL1-mrna-6052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 48,081.02 Da | 41.94 | 95.70 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.11350 | - | 227 | 390 | 2.0E-5 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56750.1 | 0 | |
| RefSeq | XP_040942146.1 | uncharacterized protein LOC107941353 [Gossypium hirsutum] | 0 |
| TrEMBL | A0A6P4N259 | O-fucosyltransferase family protein OS=Gossypium arboreum OX=29729 GN=LOC108461208 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18979 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038245 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063150 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg63726 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012980 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02289, Sgl07437 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013429, gene:ENSEOMG00000044234 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023150, CQ.Regalona.r1.3BG0023870 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189850 |
| Apiaceae | Apium graveolens | 1 | Ag10G02243 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G016640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715825, gene-LOC120105846 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1963.V1.1, AsparagusV1_04.260.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G33873 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41150.2, AT3G56750.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006019m.g.v1.0, Thhalv10016761m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05820.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g028490.2N, BniB06g000470.2N, BniB06g056210.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0888 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1010 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02540 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g10540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6052 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2636 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017629 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07318 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3534, AH03.3855, BH01.3889, BH03.4138, CH01.4150 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0249410, gene-QOZ80_3BG0278800 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0119960.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_039304, gene-QYE76_067639, gene-QYE76_067689 |
| Poaceae | Oryza coarctata | 3 | Oco05G014220, Oco06G012080, Oco13G014020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g25110.1, LOC_Os07g44700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G345300, gene-BS78_02G367400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102782, Pt_Chr0304864 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G035270, Chr04G012000, Chr12G004330, Chr24G013870 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G297300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG018320, gene_TRIDC2BG022230 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G146500.1, TraesCS2B02G171800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb017860_P002, Zm00001eb109900_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1489, nbis-gene-33108 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1150, Zma_g5665 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1331, evm.TU.LG21.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1613 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10410 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13540, nbisL1-mrna-13541 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011926 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13204 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12303 |
| Salicaceae | Populus euphratica | 3 | populus_peu10848, populus_peu26282, populus_peu37763 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607563 |
| Solanaceae | Solanum chilense | 1 | SOLCI003347200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032177 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21130_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1986 |
| Zosteraceae | Zostera marina | 2 | Zosma01g33150.v3.1, Zosma04g25240.v3.1 |