Basic Information
Locus ID:
nbisL1-mrna-6051
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 6605488 | 6613956 | + | nbisL1-mrna-6051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 200,251.06 Da | 50.37 | 84.57 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1480 | 1864 | 1.33873E-98 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1528 | 1864 | 2.0E-59 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1472 | 1864 | 8.63E-77 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 192 | 661 | 1.19E-41 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 182 | 500 | 1.2E-53 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1420 | 1661 | 3.5E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1770 | 1866 | 7.2E-15 | - |
| SMART | SM00185 | arm_5 | 224 | 265 | 75.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1491 | 1866 | 2.2E-42 | IPR000569 |
| SMART | SM00185 | arm_5 | 350 | 388 | 8.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 267 | 308 | 29.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1504 | 1866 | 41.051628 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1838 | 1860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1287 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1839 | 1854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1033 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021659090.1 | E3 ubiquitin-protein ligase UPL3-like [Hevea brasiliensis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YZV7 | HECT-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_008184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology