Basic Information
Locus ID:
nbisL1-mrna-6020
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 1221926 | 1226694 | - | nbisL1-mrna-6020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 55,218.18 Da | 63.79 | 72.36 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 144 | 196 | 1.47442E-29 | - |
| CDD | cd08368 | LIM | 171 | 246 | 0.00140702 | - |
| Pfam | PF12315 | Protein DA1 | 293 | 471 | 3.7E-81 | IPR022087 |
| Pfam | PF00412 | LIM domain | 144 | 198 | 1.2E-10 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 171 | 225 | 2.38E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 169 | 7.22E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 138 | 201 | 4.2E-14 | - |
| SMART | SM00132 | lim_4 | 143 | 195 | 6.2E-14 | IPR001781 |
| SMART | SM00726 | uim | 104 | 123 | 0.61 | IPR003903 |
| SMART | SM00726 | uim | 41 | 60 | 8.7 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 142 | 202 | 12.0187 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 104 | 123 | 9.592854 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 144 | 178 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 482 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021630216.1 | protein DA1-related 1 isoform X2 [Manihot esculenta] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JXU8 | Uncharacterized protein MANES_12G102600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology