Basic Information
Locus ID:
nbisL1-mrna-599
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6545929 | 6548968 | - | nbisL1-mrna-599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 48,139.81 Da | 50.88 | 75.06 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 130 | 398 | 1.82467E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 363 | 398 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 309 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 225 | 261 | 5.7E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 135 | 202 | 1.0E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 114 | 399 | 4.58E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 403 | 1.0E-107 | IPR015943 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 261 | 8.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 309 | 7.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 356 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 218 | 0.0092 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 398 | 1.6E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 261 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 399 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 318 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 366 | 399 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 261 | 10.390142 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 165 | 179 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 385 | 399 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27570.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021640171.1 | cell division cycle 20.2, cofactor of APC complex-like [Hevea brasiliensis] | 0 |
| Q3E906 | Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2C9UID3 | WD_REPEATS_REGION domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G042200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology