Basic Information
Locus ID:
nbisL1-mrna-5976
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 3265512 | 3275770 | - | nbisL1-mrna-5976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 147,821.80 Da | 49.08 | 79.63 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 579 | 911 | 7.80887E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1167 | 1290 | 9.92878E-53 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1027 | 1064 | 2.6E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1178 | 1280 | 2.9E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 601 | 988 | 1.6E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 565 | 911 | 3.39E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 919 | 1337 | 3.62E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1024 | 1077 | 1.65E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 671 | 766 | 3.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 552 | 639 | 1.4E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 799 | 924 | 1.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 926 | 1338 | 4.3E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1009 | 1079 | 5.5E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 1027 | 1065 | 7.7E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1197 | 1280 | 6.0E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 575 | 890 | 2.8E-29 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1174 | 1328 | 15.304091 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1027 | 1066 | 10.556635 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 691 | 873 | 11.615665 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1042 | 1051 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 494 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021676528.1 | helicase-like transcription factor CHR28 isoform X1 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology