Basic Information
Locus ID:
nbisL1-mrna-5968
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 3172846 | 3180708 | - | nbisL1-mrna-5968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 107,434.70 Da | 58.48 | 80.98 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 836 | 898 | 6.9E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 282 | 392 | 2.7E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 730 | 786 | 1.0E-4 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 165 | 417 | 4.74E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 831 | 910 | 1.82E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 729 | 793 | 9.1E-11 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 828 | 908 | 3.8E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 163 | 430 | 1.8E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 724 | 796 | 2.4E-7 | - |
| SMART | SM00358 | DRBM_3 | 730 | 794 | 4.0E-9 | IPR014720 |
| SMART | SM00577 | forpap2 | 225 | 401 | 5.0E-16 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 834 | 902 | 3.9E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 729 | 795 | 11.164263 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 166 | 414 | 15.24052 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 833 | 903 | 11.091433 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 39 | - | - |
| Coils | Coil | Coil | 22 | 50 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021670439.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X5 [Hevea brasiliensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LPS0 | protein-serine/threonine phosphatase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology