Basic Information
Locus ID:
nbisL1-mrna-5960
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 3337879 | 3342328 | - | nbisL1-mrna-5960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 104,463.92 Da | 53.00 | 67.84 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 443 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 555 | 591 | 6.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 513 | 549 | 3.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 687 | 725 | 0.045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 406 | 728 | 2.93E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 396 | 752 | 1.3E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 591 | 4.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 632 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 725 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 683 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 549 | 1.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 453 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 558 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 558 | 592 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 592 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 518 | 552 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 412 | 446 | 12.182859 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 431 | 445 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 536 | 550 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 578 | 592 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 536 | 550 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 431 | 445 | 5.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 837 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_002309053.2 | uncharacterized protein LOC7454921 [Populus trichocarpa] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QHQ9 | WD-40 repeat family protein OS=Populus alba OX=43335 GN=D5086_0000091410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology