Basic Information
Locus ID:
nbisL1-mrna-5948
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 3257507 | 3266368 | - | nbisL1-mrna-5948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 83,904.08 Da | 42.11 | 75.84 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15567 | PHD4_NSD | 467 | 506 | 1.6476E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 259 | 294 | 1.5E-8 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 416 | 449 | 8.5E-7 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 636 | 738 | 2.36E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 462 | 507 | 1.82E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 459 | 510 | 4.0E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 631 | 744 | 1.3E-5 | - |
| SMART | SM00249 | PHD_3 | 466 | 507 | 2.2E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 464 | 509 | 10.175301 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 467 | 506 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_037496987.1 | uncharacterized protein LOC105636265 [Jatropha curcas] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology