Basic Information
Locus ID:
nbisL1-mrna-5931
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9033127 | 9036503 | + | nbisL1-mrna-5931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 73,555.31 Da | 42.90 | 89.23 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 253 | 647 | 5.16959E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 299 | 649 | 2.5E-82 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 248 | 642 | 2.09E-93 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 534 | 647 | 7.6E-34 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 198 | 427 | 1.1E-39 | - |
| SMART | SM00119 | hect_3 | 265 | 649 | 5.0E-95 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 267 | 649 | 59.497498 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039064652.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL4-like [Hibiscus syriacus] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6A3BUI5 | HECT-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109978pilonHSYRG00053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology