Basic Information
Locus ID:
nbisL1-mrna-5919
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2582590 | 2585279 | + | nbisL1-mrna-5919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 41,222.18 Da | 20.88 | 76.33 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 264 | 326 | 5.85823E-10 | - |
| Pfam | PF12906 | RING-variant domain | 264 | 325 | 1.6E-5 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 328 | 1.36E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 335 | 3.4E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 263 | 326 | 1.9E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 256 | 332 | 16.135597 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021596796.1 | uncharacterized protein LOC110603391 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2NIP3 | Uncharacterized protein LOC8275155 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology