Basic Information
Locus ID:
nbisL1-mrna-5901
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2215823 | 2219146 | + | nbisL1-mrna-5901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 63,405.69 Da | 28.55 | 92.40 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 389 | 571 | 4.63966E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 30 | 191 | 3.2404E-87 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 27 | 194 | 8.2E-32 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 433 | 559 | 4.8E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 224 | 341 | 7.0E-22 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 213 | 366 | 5.02E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 389 | 583 | 2.14E-41 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 27 | 206 | 1.56E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 24 | 199 | 1.6E-57 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 382 | 570 | 2.7E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 213 | 376 | 3.4E-43 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 22 | 583 | 2.2E-206 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_021636561.1 | pyruvate decarboxylase 1-like [Hevea brasiliensis] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISH4 | pyruvate decarboxylase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology