Basic Information
Locus ID:
nbisL1-mrna-5891
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 3003635 | 3012802 | - | nbisL1-mrna-5891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 114,534.33 Da | 48.39 | 85.92 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 629 | 1024 | 7.2591E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 676 | 1026 | 2.7E-84 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 623 | 1019 | 3.79E-98 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 572 | 800 | 6.2E-40 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 909 | 1024 | 1.8E-35 | - |
| SMART | SM00119 | hect_3 | 641 | 1026 | 8.3E-109 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 643 | 1026 | 65.372276 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 311 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021638406.1 | E3 ubiquitin-protein ligase UPL4-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2M434 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology