Basic Information
Locus ID:
nbisL1-mrna-5886
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 409679 | 418583 | - | nbisL1-mrna-5886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 98,515.69 Da | 33.48 | 77.81 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 1 | 219 | 4.3E-54 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 769 | 874 | 1.7E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 475 | 687 | 5.3E-52 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 225 | 316 | 9.9E-19 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 329 | 877 | 1.33E-146 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 223 | 317 | 3.11E-25 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 1 | 220 | 6.08E-65 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 267 | 321 | 1.6E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 758 | 877 | 1.4E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 188 | 266 | 6.4E-30 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 472 | 735 | 1.2E-100 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 187 | 2.4E-70 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 333 | 444 | 2.0E-24 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 224 | 298 | 1.9E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_034890552.1 | alpha-mannosidase isoform X1 [Populus alba] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PRI1 | Alpha-mannosidase OS=Populus alba OX=43335 GN=D5086_0000189130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology