Basic Information
Locus ID:
nbisL1-mrna-5875
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Protein MID1-COMPLEMENTING ACTIVITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000065F_pilon | 357225 | 358842 | - | nbisL1-mrna-5875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 32,895.27 Da | 51.56 | 97.13 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 128 | 3.9E-17 | IPR036537 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
| Coils | Coil | Coil | 132 | 152 | - | - |
| Coils | Coil | Coil | 196 | 223 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35920.1 | PLAC8 family protein. Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium. | 0 |
| RefSeq | XP_048230112.1 | protein MID1-COMPLEMENTING ACTIVITY 1 [Ricinus communis] | 0 |
| B6SJQ0 | Cell number regulator 13 OS=Zea mays OX=4577 GN=CNR13 PE=2 SV=1 | 0 | |
| TrEMBL | B9SYT5 | MCAfunc domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0362290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11744, jg17229 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24137, gene_8432 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027256, Ah036186 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134280 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12627, Sbi_jg40010, Sbi_jg53313, Sbi_jg55336 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14327, Seu_jg8612 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010403, GOSA_00014084 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12163, Sgl17535, Sgl33635, Sgl38946 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003792, gene:ENSEOMG00000003922 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0021450, CQ.Regalona.r1.1BG0003000 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210570, pistato.v30211280 |
| Apiaceae | Apium graveolens | 2 | Ag3G01508, Ag3G02091 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G002620, COCNU_09G004500, COCNU_10G001810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719600 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2093.V1.1, AsparagusV1_07.2663.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G15925, Ftri17G30932, Ftri18G08019, Ftri18G27991 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17780.1, AT4G35920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023167m.g.v1.0, Thhalv10025310m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g31190.v2.2, Sp7g33700.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087750.2N, BniB04g026060.2N, BniB05g002610.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0086, Ceq06G0128 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0096, Cgl06G0139 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00640, gene.Cymno10g09420 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g14860, gene.Thate05g02160 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10452, nbisL1-mrna-6966 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2805 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020395, Pov_00020639 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb1G06125, Lb1G06126, Lb3G16056, Lb3G18965, Lb3G18968 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4927, BH01.4859, BH01.5137 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0234230, gene-QOZ80_3AG0234440 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0401250.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070618 |
| Poaceae | Oryza coarctata | 1 | Oco06G003370 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g06120.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G476000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601930 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G036990, Chr04G003810, Chr04G004150, Chr07G007360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G458600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG004540, gene_TRIDC4BG047110 |
| Poaceae | Triticum aestivum | 2 | TraesCS4B02G272300.1, TraesCS4D02G271400.1 |
| Poaceae | Zea mays | 4 | Zm00001eb004320_P001, Zm00001eb059120_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2864, nbis-gene-4451 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2040, Zma_g4390 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1506, evm.TU.LG05.319, evm.TU.LG12.175 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05500 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.75, evm.TU.Scaffold_4_RagTag.918 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-16996, nbisL1-mrna-213, nbisL1-mrna-27418 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13371, nbisL1-mrna-14335 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11691, nbisL1-mrna-5875 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1308, evm.TU.utg000019l.1170 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006820, Maker00008186 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15680, nbisL1-mrna-6578 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2447, nbisL1-mrna-2980 |
| Salicaceae | Populus euphratica | 2 | populus_peu14099, populus_peu20470 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617187, gene-LOC132623101, gene-LOC132638009 |
| Solanaceae | Solanum chilense | 2 | SOLCI007302000, SOLCI007471200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011521, gene-LOC107012890 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1126, gene_16268, gene_2867 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G2908, TC09G0105, TC11G0753 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31070.v3.1 |