Basic Information
Locus ID:
nbisL1-mrna-5869
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 2897150 | 2901129 | + | nbisL1-mrna-5869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 51,573.81 Da | 61.34 | 75.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 273 | 321 | 1.6336E-15 | - |
| Pfam | PF12906 | RING-variant domain | 273 | 320 | 1.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 324 | 1.77E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 329 | 1.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 272 | 321 | 1.0E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 265 | 327 | 19.258444 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048236085.1 | uncharacterized protein LOC8284538 isoform X1 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2M0S5 | Protein binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology