Basic Information
Locus ID:
nbisL1-mrna-5859
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 2841828 | 2847749 | - | nbisL1-mrna-5859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 17,361.56 Da | 66.00 | 103.58 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 92 | 157 | 5.2E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 88 | 157 | 1.02E-9 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 84 | 159 | 2.9E-6 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 94 | 159 | 10.964505 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_012082362.1 | - | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067K233 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag6G02427 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11944 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G868800 |
| Poaceae | Triticum aestivum | 1 | TraesCS7D02G264400.1.cds1 |
| Poaceae | Zea mays | 3 | Zm00001eb305650_P001, Zm00001eb310110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20334 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1179, evm.TU.LG16.1056 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g03430, gene.Posoc02g28470, gene.Posoc05g05550 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5859 |
| Salicaceae | Populus euphratica | 2 | populus_peu04681, populus_peu37962 |